VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Jun 13 2006 - 11:17:07 CDT

Ting,
  Yes, you can compute any RMSD you want, regardless whether it has been
fitted or not, etc. See the 'measure rmsd' command, or try out the RMSD
or RMSDTT tools in the extensions menu.

  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Jun 12, 2006 at 05:24:02PM -0700, Ting Wang wrote:
> Hi,
>
> Is it possible to compute the RMSD of the region that is not used to fit the two molelcues/frames?
>
> For example, I fit the first 100 residues, then compute the RMSD of the last 10 residues.
>
> Thanks for any suggestions.
>
> Ting 

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