VMD-L Mailing List

From: Leonardo G. Trabuco (ltrabuco_at_ks.uiuc.edu)
Date: Fri Jun 02 2006 - 13:24:25 CDT

On Fri, Jun 02, 2006 at 04:17:51PM +0200, Vineet Pande wrote:
> Hi,
> I am using VMD for WIN32, version 1.8.4b10 to display a simple CHARMM
> trajectory of a nucleic acid duplex. However, in the graphics, I can't see
> one of the terminal nucleotides in both the strands; the MD movie runs fine
> however. What could be the problem?

Are you using the keyword 'nucleic' in your atom selection? Which
representation are you using?

Leo 

-- 
Leonardo Giantini Trabuco
Ph.D. candidate
Center for Biophysics and Computational Biology
University of Illinois at Urbana-Champaign