From: John Stone (
Date: Tue Apr 05 2005 - 17:17:10 CDT

This could probably be done by modifying Luis Gracia's RMSDTT
plugin a bit. You'd need to do the plotting part with your
own scripts and/or additional software. There's also a
per-residue RMSD script included in one of the VMD/NAMD
tutorials that you might be able to adapt for this purpose.


On Tue, Apr 05, 2005 at 09:24:28AM -0700, Anuradha Mittal wrote:
> Hi!
> I need the script to get the rmsd of each residue for the entire
> trajectory. The available scripts either calulates the average rmsd of
> each residue for the whole trajectory or average rmsd of the whole
> protein for the entire trajectory.In a way i want a combination of
> both scripts. I require to plot a 3d graph with three axis as residue
> number,rmsd and time step.
> does anyone has the script to get this data?
> Thanks
> Anu

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