VMD-L Mailing List
From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Wed Nov 20 2024 - 10:42:45 CST
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problem solved - in case this happens to anyone else, I went into the
NVIDIA control panel under the "Manage 3D settings/program settings", and
deleted the entry for VMD. It worked fine after that.
On Tue, Nov 19, 2024 at 5:10 PM Carlos Simmerling <
carlos.simmerling_at_gmail.com> wrote:
> hi all,
> I replaced my older quadro card with a RTX 3060 on my windows 10
> workstation. VMD had been working fine, but after the update only showed a
> back home screen (with no axes shown either). When I load a molecule,
> nothing shown. If I change the background to white, it stays black.
>
> I updated the NVIDIA drivers (studio v566.14 Nov 12 2024), uninstalled and
> reinstalled VMD, with multiple reboots and still the same problem.
>
> VMD says this when I start, if it's helpful:
>
> Info) VMD for WIN64, version 1.9.4a53 (June 29, 2021)
> Info) http://www.ks.uiuc.edu/Research/vmd/
> Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
> Info) Please include this reference in published work using VMD:
> Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
> Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
> Info) -------------------------------------------------------------
> Info) Multithreading available, 12 CPUs, ISA dispatch enabled.
> Info) CPU features: SSE2 SSE4.1 AVX AVX2 FMA F16 HT
> Info) Free system memory: 24GB (76%)
> Info) Creating CUDA device pool and initializing hardware...
> Info) Unable to load NVML library, GPU-CPU affinity unavailable.
> Info) Detected 1 available CUDA accelerator::
> Info) [0] NVIDIA GeForce RTX 3060 28 SM_8.6 1.8 GHz, 4.0GB RAM SP32 KT AE5
> ZC
> Info) OpenGL renderer: NVIDIA GeForce RTX 3060/PCIe/SSE2
> Info) Features: STENCIL STEREO MDE CVA MTX NPOT PP PS GLSL(OVFGS)
> Info) Full GLSL rendering mode is available.
> Info) Textures: 2-D (32768x32768), 3-D (16384x16384x16384), Multitexture
> (4)
> Info) No joysticks found. Joystick interface disabled.
> Info) Detected 1 available TachyonL/OptiX ray tracing accelerator
> Info) Compiling OptiX shaders on 1 target GPU...
> Info) Dynamically loaded 76 plugins in directory:
> Info) C:/Program Files/VMD/plugins/WIN64/molfile
> vmd > Info) Using plugin pdb for structure file
> F:/carlos-files/Downloads/test.pdb
> Info) Using plugin pdb for coordinates from file
> F:/carlos-files/Downloads/test.pdb
> Info) Determining bond structure from distance search ...
> Info) Analyzing structure ...
> Info) Atoms: 304
> Info) Bonds: 310
> Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0
> Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0
> Info) Residues: 20
> Info) Waters: 0
> Info) Segments: 1
> Info) Fragments: 1 Protein: 1 Nucleic: 0
> Info) Finished with coordinate file F:/carlos-files/Downloads/test.pdb.
> Info) In any publication of scientific results based in part or
> Info) completely on the use of the program STRIDE, please reference:
> Info) Frishman,D & Argos,P. (1995) Knowledge-based secondary structure
> Info) assignment. Proteins: structure, function and genetics, 23, 566-579.
>
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