From: John Stone (
Date: Wed Dec 01 2021 - 00:42:12 CST

  I'm guessing that this hang is caused by some bug in the multiseq
plugin related to its use of Tk, but that is only a guess.
Do you see any error messages in the main VMD console associated
with the hanging behavior, or is the hang the only observable behavior?

  John Stone

On Fri, Nov 26, 2021 at 11:05:02PM -0500, Phillip Compeau wrote:
> Hi,
> I am integrating VMD into a publicly available assignment that I
> provide to my course as well (;!!DZ3fjg!pDclAv9hZA92L09-ahO0FM6uDcyFOGbfeoCQpKkV1Rz8lrsqL5MxWaVg_EjA4Hs4cg$
> ).
> As part of this, students are asked to, in the MultiSeq window,
> select Tools -> STAMP alignment options -> ok to perform a STAMP
> alignment with the default settings. However, this freezes for my
> students. At first I thought this was Windows only but it seems to
> affect both Windows and Mac.
> Thanks for your help! I'm not sure where else would make sense to
> report this issue.
> Regards,
> Phillip Compeau

NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801           Phone: 217-244-3349