From: Francesco Pietra (
Date: Thu Nov 25 2021 - 02:15:38 CST

This is to ask which is the reason for disrupting some GUI features with
VMD 1.9.4a55 linux.

That is, in my hands, when dealing with organic molecules, Automatic PSF
Builder requires deleting all Topology Files before adding those for the
organic molecule, otherwise it does not work.

With Add Solvation Box for non-acqueous, VMD crashes reporting errors,
while psf/pdb are obtained correctly. VMD has to be restarted to measure
center/cell dimensions

I know that, to this regard, there are very useful tcl commands from the TK
console, however with complex systems made of many chains - as it often
occurs to me - the GUI relieves from much work

francesco pietra
Beg pardon if all those problems simple arise from my incorrect use of the