From: Smith, Harper E. (
Date: Wed May 12 2021 - 13:27:57 CDT


Here is what I use:;!!DZ3fjg!r3WUS9nawgzhgf_orGvi4cns_NlKx1T4-UzEcfa6aJZ3WCTfoP7RdIVrq6-vBDVJdA$
I like this plugin because it can also visualize output from other programs.

Harper Smith
From: <> on behalf of Lilian Esmeralda Araujo Arcos <>
Sent: Wednesday, May 12, 2021 1:16 PM
To: <>
Subject: vmd-l: Clustering by RMSD

Dear all,
 I'm trying to find a way to do clustering analysis using vmd. I came across a .TCL file that claims to do it but at the end the pdb files contain errors. Does anyone know a way to do this type of analysis? Or may be another program that can carry this type of analysis using windows 🪟??
Thanks for your help 👍