From: Smith, Harper E. (
Date: Fri Jul 24 2020 - 01:34:26 CDT


If you have a .dcd file, just use CatDCD .

You can make your index file as explained in .

Hope it helps,
From: <> on behalf of Yogesh Sharma <>
Sent: Friday, July 24, 2020 2:05 AM
To: <>
Subject: vmd-l: writing a new trajectory with selected atoms


I was wondering if its possible to select some atoms from a trajectory file and make a new trajectory for that selection. For instance writing trajectory for protein only. Is there any way to do it?