VMD-L Mailing List
From: Josh Vermaas (joshua.vermaas_at_gmail.com)
Date: Wed May 27 2020 - 10:49:31 CDT
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Is there a newline at the end of the file? NAMD's parser is picky, and
wants an empty line at the end of files it reads in.
-Josh
On Wed, May 27, 2020 at 4:51 AM Hélder Bandarra Tavares <
H.D.BandarraTavares_at_tudelft.nl> wrote:
> I'm trying to use Extrabonds to keep 2 atoms close to each other, so I
> created a .exb file containing "bond 7 86 1 5" and wrote in the
> configuration file "
> extraBonds on
> extraBondsFile Extrabonds.exb". However, when I try to run it I get the
> following message:
>
> "
> Charm++ fatal error:
> FATAL ERROR: ABNORMAL EOF FOUND - buffer=*bond 7 86 1 5*"
>
> Where 7 and 86 are the atoms I want to keep at a distance of 5 A. Do you
> know what I'm doing wrong?
>
> Thank you in advance,
> Hélder Tavares
>
>
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