From: Jérôme Hénin (
Date: Sun Mar 22 2020 - 08:06:47 CDT


the *measure hbonds* command is just what you need:


On Sun, 22 Mar 2020 at 08:52, 刘宸宇 <> wrote:

> Hi everyone,
> I am currently running analysis on hydrogen bonding within my trajectory
> with the "Extensions: Analysis: Hydrogen bonds" tool. Due to the large size
> and large number of my trajectories, running this process interactively
> will be a painful and time-consuming process. I was wondering if someone
> could possibly point out a way to run this process with script so that I
> can submit the job to the server without running it interactively. Any
> suggestion is appreciated!
> Thanks,
> Chenyu