From: Hoda Shirzad (
Date: Sat Nov 02 2019 - 00:43:18 CDT


I am generating PDB files during my MD simulations which contain bond
information via "connect" order. The bonds are updating during the
simulation, but VMD does not update the bonds.
How can I visualize the updated bonds?
I found this <>link
in my searches, However, It is an old program and cannot be used.
Thank you,