From: Neena Susan Eappen (
Date: Wed May 01 2019 - 16:54:29 CDT

Hello VMD users,

I uploaded a peptide structure with its trajectory and used H-bond plugin to figure out possible H bonds. The C-terminus has a capping amide group. The H-bond plugin never catches any H-bond information from that capping group. Any insight would be appreciated.

Many thanks,