From: John Stone (
Date: Thu Nov 08 2018 - 21:47:29 CST

If your entire trajectory can be loaded into VMD at once, you
can load your trajectory, and then use the File | Save Coordinates menu item
to select the atoms of interest, and then write it all out to a new
file, whether PDB, DCD, or otherwise. This is essentially the same
way that one would do it with CatDCD, but all within VMD itself.
It is a more convenient way if your have enough RAM to load all of your
trajectory frames at once.

  John Stone

On Thu, Nov 08, 2018 at 10:40:32AM +0530, Abhik Ghosh Moulick wrote:
> Thanks John. Any alternate way?
> Regards
> Abhik Ghosh Moulick (JRF)

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