VMD-L Mailing List

From: Lewis, Kimberly A (lewiskim13_at_students.ecu.edu)
Date: Mon Sep 24 2018 - 13:27:06 CDT

Hello,

When using VMD, specifically the residue based course grain builder, I know there is the protein and water sets that you can add to use. Is there something that will create Ions as a bead, that are bound to the protein such as Calcium? When I have tried so far, the beads are generated for the amino acids but the calcium ions are missing from the cg pdb.

Thank You,

Kimberly Lewis

East Carolina University

Department of Chemistry