From: Shahee Islam (
Date: Mon Jan 29 2018 - 01:41:15 CST

in this case from the pdb file atfrirst i found the sulfide containig bead
and then mention them in the disufide patch command.Please help me to solve
this problem.

Thanking you
Shahee Islam
university of calcutta
department of chemistry

On Mon, Jan 29, 2018 at 11:31 AM, Shahee Islam <>

> Hi
> I have made coarse grained protein according to residue base coarse
> grained tutorial,after that generate psf using vmd auto psf plugin.There
> are disulfide bond,which i generate using patching disulfide bond.But the
> problem is, the disulfide bonds are not showing in vmd.
> in autopsf.log file these lines are present:
> Applying patch: DISU Prot:15 Prot:278
> Applying patch: DISU Prot:69 Prot:252
> Applying patch: DISU Prot:147 Prot:179
> Applying patch: DISU Prot:171 Prot:205