From: Roshan Shrestha (
Date: Sat Sep 02 2017 - 06:19:11 CDT

Dear all,
            I have a simple 5 ns MD run of protein ligand complex using
NAMD. How can we visualize the hydrogen bond formed between the ligand and
the residue (say [ARG120]) in vmd ?

Roshan Shrestha
M.Sc (Physics)
Central Department of Physics,Tribhuvan University