From: Albert (
Date: Sat Aug 19 2017 - 00:20:27 CDT


I have finished a QM/MM calculation and imported the trajectory into
VMD. I played the movie in VMD and found that the bonds were not updated
according to QM/MM calculation. Some bond is distorted to unusual long
instead of forming a new bond with new atoms.

So I am just wondering how shall we tell VMD update bond connections
according to atom distance automatically for playing trajectory?

thanks a lot