From: Roshan Shrestha (
Date: Mon Jul 31 2017 - 03:42:05 CDT

     I want to do deuterium order parameter analysis in gromacs. For that,
I need to make an index file of atoms for each chain. In order to choose
atom names, I am trying to use vmd.
     I can select lipids for graphical representation in vmd, but how to
view a single layer only in vmd ? Also, is it possible to select the atom
names for each chain in vmd ?


Roshan Shrestha
Graduate Student
Central Department of Physics,Tribhuvan University