VMD-L Mailing List

From: Roshan Shrestha (roshanpra_at_gmail.com)
Date: Mon Jul 31 2017 - 03:42:05 CDT

Hi,
     I want to do deuterium order parameter analysis in gromacs. For that,
I need to make an index file of atoms for each chain. In order to choose
atom names, I am trying to use vmd.
     I can select lipids for graphical representation in vmd, but how to
view a single layer only in vmd ? Also, is it possible to select the atom
names for each chain in vmd ?

Thanks 

-- 
Roshan Shrestha
Graduate Student
Central Department of Physics,Tribhuvan University
Kathmandu,Nepal