VMD-L Mailing List

From: Ashar Malik (asharjm_at_gmail.com)
Date: Thu Jun 08 2017 - 10:58:40 CDT

Do you mean you want the angle between two secondary structure fragments
forming parallel or anti-parallel beta-sheets?
Or
Do you want to measure all the H-bonds?

The H-bond angle would be measured between A-D-H. (Acceptor - Donor). Look
into the H-bond plugin.
http://www.ks.uiuc.edu/Research/vmd/plugins/hbonds/

To form a beta - sheet parallel or anti - you need multiple hydrogen bonds.
So maybe you should explain your question a bit more!!??

On Fri, Jun 9, 2017 at 2:52 AM, Shashank Ranjan Srivastava <
sranjan_at_iiserb.ac.in> wrote:

> Hello everyone,
>
> Is there any way to get H-bond angle between two beta-strand either for
> Parallel or Anti-parallel topology in beta barrel.
>
> Thank You
>
> --
> Shashank Ranjan Srivastava
> Molecular Biophysics Laboratory
> Department of Biological Sciences,
> IISER-Bhopal,
> Madhya Pradesh
>
> 

-- 
Best,
/A