From: Daniela Rivas (
Date: Mon Apr 03 2017 - 08:30:17 CDT

Hi Monika,

It's really easy. You just plot the data using Namd plot and then on the graph window that appears there's the option to save as a matrix containing all the data you plotted.


Sent from my iPhone

> On 30 Mar 2017, at 5:21 pm, Monika Madhavi <> wrote:
> Dear all,
> I know I can plot the properties of the system with time using "NAMD plot" in VMD. I want to know is it possible to extract data points of these plots from the log file (e.g temperature values with the time step) using VMD. I would be grateful for any help.
> Thank you.
> Best regards,
> Monika
> --
> W.A.Monika Madhavi
> Lecturer (Probation),
> Department of Physics,
> University of Colombo.