VMD-L Mailing List
From: João Ribeiro KS (jribeiro_at_ks.uiuc.edu)
Date: Fri Feb 10 2017 - 09:52:29 CST
please reply to "all" so we can keep track of the answers to this question
in the mailing list.
>From what you described, you must be using NAMDGui instead of QwikMD. These
are different plugins with different purposes.
Please open the CKMD.out file, which is the namd log/output file, and check
for errors in the end.
On Fri, Feb 10, 2017 at 9:30 AM Danu Fajar <dfr879_at_gmail.com> wrote:
> Hi Joao, thank you for response and try to helping me.
> I think I do use QwikMD plugin, beacuse I found it in the folder.
> .) these are the steps:
> 1. I was download the NAMD version 2.12 (and also try for 212b) for win 64
> 2. the whole extracted file (including "namd2.exe) was extracted in the
> same folder with VMD application
> (C:\Program Files (x86)\University of Illinois\VMD)
> 3. Open VMD, and run the NAMD simulation from GUI
> 4. soon after I run NAMD, the tools which said "namd2.exe stopped working"
> .) Here is the last message in TK Console:
> 5514 atoms total
> Starting NAMD...
> .) and the last message in CMD
> info> Finished with coordinate file CKMD_fixed.pdb
> info> Finished with coordinate file
> .) the log file created was CKMD.namd (NAMD file) and CKMD.out (OUT file)
> that's all information I have for now, so I really don't know what to do.
> have any Idea? tell me if you need anything to help you solve my problem.
> Best Regards,
> On Fri, Feb 10, 2017 at 8:23 PM, João Ribeiro KS <jribeiro_at_ks.uiuc.edu>
> Dea Danu,
> without more details is difficult to say the exact reason why NAMD stopped
> working. How did you started NAMD? Are you using any VMD plugin, such as
> QwikMD? Can you list the steps to reproduce the error?
> Anyway, please check the terminal window of VMD for any message and check
> the end of the log file created by NAMD (usually located in the same folder
> as the NAMD configuration file).
> Best wishes
> On Thu, Feb 9, 2017 at 10:54 PM Danu Fajar <dfr879_at_gmail.com> wrote:
> Dear all,
> I've tried to run NAMD on windows, but when I running the NAMD, a tool box
> appear and said "namd2 stopped working".
> I don't know why this is happen.
> How can I fix this ?
> João Vieira Ribeiro
> Theoretical and Computational Biophysics Group
> Beckman Institute, University of Illinois
> +1 (217) 3000380 <(217)%20300-0380>
João Vieira Ribeiro
Theoretical and Computational Biophysics Group
Beckman Institute, University of Illinois
+1 (217) 3000380