VMD-L Mailing List
From: Peter Freddolino (petefred_at_umich.edu)
Date: Thu Oct 20 2016 - 21:25:24 CDT
That really depends on what your protein is. Do you want it to have a realistic structure?
> On Oct 20, 2016, at 2:29 PM, Raviteja Kurapati <tsii.ravi_at_gmail.com> wrote:
> Thank you Peter and John for your response. I have not given any selection. It is worked when i entered selection. Actually I want to insert my protein in mixed solvents. Is there any option or plugin available for VMD by which i can build initial configuration?
> Best Regards,
> Raviteja Kurapati
> On Thu, Oct 20, 2016 at 11:12 PM, John Stone <johns_at_ks.uiuc.edu> wrote:
> Can you post the startup messages that VMD prints when you run it?
> What hardware and OS are you running on?
> John Stone
> On Thu, Oct 20, 2016 at 05:57:34PM +0530, Raviteja Kurapati wrote:
> > Hi, I am using vmd 1.9.2. No CUDA devices. When I open molfacture plugin,
> > atoms are not listed in molfacture window and OpenGL Display not showing
> > any atoms. But main window is showing a .xbgf file. What is the problem
> > and How can I solve this?
> > Best Regards.
> > Raviteja Kurapati
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349