VMD-L Mailing List
From: Felipe Montecinos (fmontecinos_at_gmail.com)
Date: Mon May 02 2016 - 09:49:21 CDT
I totally forgot to respond to your email.
Your fix worked nicely, the sequences are now in boldface font. GREAT!
About the the secondary structure depiction.
I know how to show the secondary structural elements along with the
sequence in multiseq, I use it a lot. It's just that it always appears in
black, cannot modify it's colors. Anyway I could do this?
Thanks a lot!
On Tue, Jul 14, 2015 at 1:06 PM, Lai, Jonathan <jlai7_at_illinois.edu> wrote:
> Dear Felipe,
> Sorry for the delay in responding. I have modified the seqedit_widget.tcl
> file that makes the sequence letters bold face. I hope that helps.
> You can apply the patch as follows:
> 1) Download the tcl file.
> 2) Navigate to the plugins directory of your vmd build. On my Ubuntu
> machine, the plugins directory was found here:
> 3) Copy the new tcl file and replace the seqedit_widget.tcl
> As for the secondary structure, you can click on the little "r" button
> that is next to the sequence name. That should show the secondary
> *From:* Felipe Montecinos [fmontecinos_at_gmail.com]
> *Sent:* Friday, July 10, 2015 1:16 PM
> *To:* Lai, Jonathan
> *Cc:* vmd-l_at_ks.uiuc.edu
> *Subject:* Re: vmd-l: Multiseq display settings
> Thanks a lot!
> Looking forward for those fixes.
> Enjoy your weekend!
> On Fri, Jul 10, 2015 at 1:57 PM, Lai, Jonathan <jlai7_at_illinois.edu> wrote:
>> Dear Felipe,
>> I am current working on the Multiseq plugin. I'll take a look this
>> weekend to see what can be done to make the display better.
>> *From:* owner-vmd-l_at_ks.uiuc.edu [owner-vmd-l_at_ks.uiuc.edu] on behalf of
>> Felipe Montecinos [fmontecinos_at_gmail.com]
>> *Sent:* Friday, July 10, 2015 11:28 AM
>> *To:* vmd-l_at_ks.uiuc.edu
>> *Subject:* vmd-l: Multiseq display settings
>> Hi VMD people,
>> I have two questions for the VMD/Multiseq community:
>> 1. How to change fonts in the multiseq sequence display. The current
>> configuration/settings uses a font that looks very dim, not good.
>> 2. How to color secondary structure representation, by secondary
>> structure element, in the multiseq display.
>> Finally, the ultimate goal is to make the multiseq window/screenshoot to
>> look good for publication and/or presentations.
>> Any suggestions?
>> PD: I'm not a programmer/robot
>> *Felipe Montecinos F.*
> *Felipe Montecinos F.*
-- *Felipe Montecinos F.*