VMD-L Mailing List
From: Deng, Jinxia (Nancy) (jinxianancy.deng_at_zoetis.com)
Date: Tue Mar 15 2016 - 15:48:41 CDT
I after some steps of pbc wrap, the peptide bound seems always stretch cross the unitcell. then I use "pbc join fragment -all -verbose" .
This "join" process is super slow, 2 hrs can progress 1/4 of my trajectory (35K atoms of peptide with membrane). So I am just wondering whether you experienced the same, any way can speed this up??