VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Sun Apr 18 2004 - 19:24:40 CDT
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- In reply to: li: "move molecule using tcl"
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Hi,
These are both covered in the VMD User's guide in the section about
atom selections:
http://www.ks.uiuc.edu/Research/vmd/current/ug/node176.html#12947
You want to do something like this:
set sel [atomselect top "all"]
$sel moveby {3 3 2}
$sel writepdb mynew.pdb
$sel delete
Dig into the User's Guide text about the atomselect command,
that's where a lot of the action is.
John
On Thu, Apr 15, 2004 at 02:46:00PM +0800, li wrote:
> Hi,all:
> a simple question:
> how to move a molecule and write a new pdb file in VMD?
> say i want to move the center to (0,0,1) from (3, 3, 3).
> thanks in advance!!
> --
> USTC Alumni Email System
>
>
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
- Next message: John Stone: "Re: how to make whole biological unit / virus capsid from pdb BIOMT records"
- Previous message: John Stone: "Re: Re: how to make unique chain pdb identifier of virus capsid 60 mer?"
- In reply to: li: "move molecule using tcl"
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