VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Apr 16 2004 - 13:27:44 CDT

Josh,
  I've seen webpdb crash on the very new Athlon64 port of VMD, but
not on normal linux builds. I assume that if you download the same
pdb and load it from local disk it works fine right? What if you run
vmd like this:
  source /usr/local/bin/vmd
  (exit that VMD session)
  gdb /usr/local/lib/vmd/vmd_LINUX
  (type "run" at the gdb prompt)
  Then load your webpdb structure that crashes it normally.
  Then type "where" at the gdb prompt, and email me what it says.

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Apr 16, 2004 at 09:24:41AM -0500, Josh Ward wrote:
> Is there a precedence for loading files using webpdb to crash the
> program? I am running vmd-1.8.2 on Debian Linux. When I try to load a
> molecule via webpdb, some messages appear in the console, but the
> program crashes and exits too quickly to read them. I was wondering if
> you've run across this problem yet, and hoping there is a quick fix.
>
> Thanks,
>
> Josh Ward 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078