VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Dec 02 2015 - 15:19:11 CST
You don't mention your purpose, but if your purpose is visualization
related, try using the "dynamic bonds" representation. If you're dealing
with some kind of reaction simulation, perhaps you can say more about what
you're trying to do here?
On Wed, Dec 02, 2015 at 10:42:30AM +0530, Karteek Kumar wrote:
> Hi Users,
> Is there any way of determining the connectivity information on the fly.
> Instead of assuming the connectivity of first frame.A
> I tried with '" topo guessbonds and topo retypebonds". But how to execute
> for all the frames.
> Thanks in advance
-- NIH Center for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/