VMD-L Mailing List

From: Daniela Rivas (dani.rivas.r_at_gmail.com)
Date: Thu Aug 20 2015 - 08:54:58 CDT

Hi,

I have a question about the Namd Plot Plugin. When I select to plot the
Pressure, what exactly does it plot? I'm getting really high pressures
(around 2.000 bar) and it doesn't make sense to me.

My Namd log file is from a Molecular Dynamics simulation of a membrane
protein (150.000 atoms in the system app.). I set the pressure at 1 atm but
also used the *useGroupPressure.*

Thanks in advance,
Daniela.