VMD-L Mailing List
From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Thu Jun 25 2015 - 08:56:29 CDT
On Thu, Jun 25, 2015 at 9:29 AM, Vidyalakshmi CM
> Dear All,
> I am trying to visualize the gromacs output .xtc trajectory on VMD. I am
> generating .xtc trajectory frames every 5 ps. The total simulation run time
> is 24195 ps which should give me 4839 frames (without any skip). However,
> when I load frames say 4000 to 4100, I get the error message 'Error reading
> timestep, file does not match format'.
> With a skip of 10, I find the trajectory loads only initial frames (~200
> frames out of more than 480 which is expected). Please advise.
this sounds like your trajectory file has been corrupted somehow.
> I have used VMD for viewing .xtc trajectories previously and have never had
> this issue previously.
> Please help.
> Thanks and Best Regards,
-- Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0 College of Science & Technology, Temple University, Philadelphia PA, USA International Centre for Theoretical Physics, Trieste. Italy.