VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Jun 04 2015 - 19:18:46 CDT
I think the simplest thing would be to use an atom selection to
write a PSF, e.g. after loading your cms file, do this:
set sel [atomselect top all]
$sel writepsf newfile.psf
Try that and see if it works for you.
On Wed, Jun 03, 2015 at 03:03:34PM -0500, lecan wrote:
> Hello everybody.
> VMD program now have a plug-in to handle Desmond trajectories. This
> plug-in enable VMD to convert cms files from Desmond (Schrodinger)
> to NAMD dcd files. I wonder if it is possible to generate a PSF file
> for the system displayed on VMD program, and if it is possible, what
> is the way to do it.
> Luis L.
-- NIH Center for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/