VMD-L Mailing List
From: Josh Vermaas (vermaas2_at_illinois.edu)
Date: Wed Mar 25 2015 - 09:48:04 CDT
VMD needs to be fed a periodic box size in order for periodic images to be drawn properly. DCD files store box information, but PDB files generally do not. Take a look at the pbctools plugin on how to set the box manually.
On Mar 25, 2015 7:06 AM, Viswanath Pasumarthi <v.pasumarthi_at_iitg.ernet.in> wrote:
> Dear VMD Users,
> The periodic tab in the Graphics Representations window displays periodic
> images of the unit cell in the desired direction. Though this function is
> working absolutely fine when PSF+DCD provided as input, however the same
> is not working when PSF+PDB is provided as the input. What is the reason
> for this behavior?