From: Viswanath Pasumarthi (v.pasumarthi_at_iitg.ernet.in)
Date: Fri Feb 13 2015 - 03:17:41 CST

Thanks a lot Ashar. After using just -nonb, all inputs in the command line
are being read. That alone is the error, it was none regarding spaces in
the path, nor mentioning the paths directly or indirectly in the command
line.

> also try changing the name of your file to
> IL219_Mixed_eq.xsc
> instead of IL219-Mixed_eq.xsc
> other than these two things - there "APPEARS" to be nothing wrong with
the
> way you are using this, it should work.
> On Thu, Feb 12, 2015 at 10:49 PM, Ashar Malik <asharjm_at_gmail.com> wrote:
>> i dont understand why you are using this:
>> (-vdw || -elec || -nonb)
>> just
>> -nonb
>> will give you the vdw as well as the elec between the two selections.
On Thu, Feb 12, 2015 at 10:15 PM, Viswanath Pasumarthi <
>> v.pasumarthi_at_iitg.ernet.in> wrote:
>>> > please attach your script file directly -- instead of copying ---
>>> please
>>> > send here instead of drop box, cause I cant see them there -- just
>>> the
>>> > original script you use where you have the namdenergy plugin being
>>> called.
>>> IntEnergy.tcl - where namdenergy plugin is being called
>>> This script is being run after loading the psf and dcd files.
>>> > On Thu, Feb 12, 2015 at 10:00 PM, Ashar Malik <asharjm_at_gmail.com>
>>> wrote:
>>> >> ‚ÄčOk now we are on the same page and agree what the error is --
let
>>> me
>>> >> look
>>> >> at your scripts --
>>> >> --
>>> >> Best,
>>> >> /A
>>> > --
>>> > Best,
>>> > /A
>> --
>> Best,
>> /A
> --
> Best,
> /A