VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Nov 12 2014 - 22:42:24 CST
I'm not familiar with what is contained in the .sos file, so
I can't answer. If you have the source code for sos_triangle,
perhaps it just needs to be recompiled to support a larger problem size,
particularly if it's a Fortran code....
On Sat, Nov 08, 2014 at 05:18:08PM +0100, Albert wrote:
> I am calculatiing the hole in a very big protein with program "HOLE",
> and it generated a .sos file with command:
> sph_process -dotden 5 -colour -sos 4pir.sph 4pir.sos
> However, I am trying to generate file for vmd with command:
> sos_triangle -s -v < 4pir.sos > 4pir.vmd
> but it failed with messages:
> ERROR:Maximum number of co-ordinates exceeded!
> Program TERMINATED
> It seems that the coordiante is too big? I am just wondering could VMD
> read .sos directly?
> Thank you very much.
-- NIH Center for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/