VMD-L Mailing List
From: khannan krishna (khannan.krishna_at_gmail.com)
Date: Fri Sep 26 2014 - 06:14:22 CDT
Thank you axel, I have used vesta visualization software
for that. I was not able to find the procedure of selecting atoms and
assign different color only to that atoms in vmd. Is it possible to do so ?
Department of Material science,
university of calicut.
On Fri, Sep 26, 2014 at 3:35 PM, khannan krishna <khannan.krishna_at_gmail.com>
> Yes, Dynamicbonds option is not working.
> Khannan Krishna
> Research scholar,
> Department of Material science,
> university of calicut.
> On Fri, Sep 26, 2014 at 2:29 PM, Axel Kohlmeyer <akohlmey_at_gmail.com>
>> On Fri, Sep 26, 2014 at 1:48 AM, khannan krishna
>> <khannan.krishna_at_gmail.com> wrote:
>> > Dear all,
>> > I have no bonds and angles in xyz trajectories, since I used
>> > bond potential. Can we create bonds between atoms with in a cut-off
>> > between atoms ?
>> have you tried the DynamicBonds representation?
>> > Khannan Krishna
>> > Research scholar,
>> > Department of Material science,
>> > university of calicut.
>> Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0
>> College of Science & Technology, Temple University, Philadelphia PA, USA
>> International Centre for Theoretical Physics, Trieste. Italy.