VMD-L Mailing List
From: Dawid das (addiw7_at_googlemail.com)
Date: Sat Aug 23 2014 - 13:55:48 CDT
Dear VMD experts,
I have technical question about calculating salt bridges in VMD. When VMD
plots the distance between let's say GLU7 and ARG56 as a function of time,
what distance it actually is? Between what atoms of these residues? Or is
it distance between centers of mass of negative and positive charge?