From: Axel Kohlmeyer (
Date: Mon Apr 14 2014 - 16:56:59 CDT

On Mon, Apr 14, 2014 at 11:11 PM, Bryan Roessler <> wrote:
> Hello,
> What would be the best way to slowly increase the constraint force on a
> dihedral angle during a simulation? Is there a way to alter the extrabonds
> force parameter while the simulation is running? Where would I make the
> incrementing loop statement, in the namd configuration file, in the
> extrabonds file, or somewhere else?

before you add any more questions... wouldn't it be better to ask all
those questions about NAMD on the namd-l mailing list?

> Thank you,
> Bryan Roessler | Graduate Research Assistant
> UAB | The University of Alabama at Birmingham
> Knowledge that will change your world

Dr. Axel Kohlmeyer
College of Science & Technology, Temple University, Philadelphia PA, USA
International Centre for Theoretical Physics, Trieste. Italy.