VMD-L Mailing List
From: Jacob Durrant (jacobdurrant_at_gmail.com)
Date: Mon Feb 17 2014 - 13:30:56 CST
Thanks John! Yeah, you can't imagine how much I use QuickSurf now. :) It's
amazing how quickly it renders. ~Jacob
On Mon, Feb 17, 2014 at 9:33 AM, John Stone <johns_at_ks.uiuc.edu> wrote:
> Sorry for the slow reply, I was out of the office traveling for the last
> several days. I was the one you probably remember meeting with
> when you visited. I recall briefly showing you how to use QuickSurf for
> virus structure while you were here.
> John Stone
> On Sat, Feb 15, 2014 at 01:19:12AM -0700, Jacob Durrant wrote:
> > Thanks, guys! This is exactly what I was trying to remember. ~Jacob
> > On Wed, Feb 12, 2014 at 4:16 PM, Josh Vermaas <vermaas2_at_illinois.edu>
> > wrote:
> > Hi Jacob,
> > Any of the fields that VMD stores as an integer are good candidates
> > using the modulo operation on when constructing an atom selection.
> > residue % 3 == 0 would give you every third residue
> > index % 2 == 0 would give you every other atom (by index).
> > You might be interested in more atomselection math functions to
> > the amount of volume that is shown at once.
> > See http://www.ks.uiuc.edu/Research/vmd/vmd-1.9.1/ug/node19.htmlfor a
> > simple example.
> > -Josh Vermaas
> > On 02/12/2014 02:37 PM, Jacob Durrant wrote:
> > A few months ago I was visiting Klaus Schulten's group, and one
> of the
> > VMD developers there showed me a very convenient atom selection
> > selecting every other atom, or every third atom, etc. It made
> > large structures much faster and easier. I've searched the
> > and can't find that command anywhere. Can anyone here point me in
> > right direction?
> > Thanks,
> > Jacob
> > --
> > ==============================
> > Jacob D. Durrant, PhD
> > Rommie E. Amaro Research Group
> > University of California, San Diego
> > Connect with me on LinkedIn
> > jacobdurrant_at_gmail.com
> > jdurrant_at_ucsd.edu
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
-- ============================== Jacob D. Durrant <https://amarolab.ucsd.edu/~jdurrant/>, PhD Rommie E. Amaro Research Group <https://amarolab.ucsd.edu/> University of California, San Diego Connect with me on LinkedIn<http://www.linkedin.com/profile/view?id=94290749> jacobdurrant_at_gmail.com jdurrant_at_ucsd.edu