From: Sanjib Chowdhury (
Date: Thu Jan 16 2014 - 16:53:54 CST



When I visualize my water model in VMD using cpk or bond drawing method, it
shows bonding between H in the water

molecule. How I can avoid this? I guess I need to change the bond order
cut-off value. How can I change it in VMD?


I will appreciate your suggestion.