VMD-L Mailing List

From: Ramin Ekhteiari (ramin_ekh_at_yahoo.com)
Date: Fri Jan 10 2014 - 12:01:22 CST

Hi dears, I did a MD run, that include dimer protein (HIV), when I 'm loading the DCD file into VMD, trying to keep the protein at the centre of the box by using these commands: *pbc wrap -centersel "protein" -center com -compound residue -all * But at the result I got lines between 2 monomer of proteins and not centred. I would greatly appreciate for any advice... Cheers