From: Jim Phillips (
Date: Tue Nov 11 2003 - 17:26:02 CST


This is impossible to diagnose without seeing the actual error messages
and relevant portions of the topology and input PDB files.


On Tue, 11 Nov 2003, himanshu chandola wrote:

> hello everyone,
> on using psfgen on my protein which has ADP as the ligand - i
> encounter warning errors that no atom by C* found. As i didn't get any C*
> in the param file i aliased C* to C' in the param file. This resulted in
> the structure except one uninitialized coordinate of one atom(of ADP). On
> using delatom i continued getting atleast one atom as uninitialized.
> Any idea where i am getting wrong - and what possibly can be done atleast
> on the psfgen level.
> regards,
> himanshu chandola
> iit delhi
> ----------------------------------------
> Morpheus: Do you believe in fate, Neo?
> Neo: No.
> Morpheus: Why Not?
> Neo: Because I don't like the idea that I'm not in control of my life.