From: Ajasja Ljubetič (
Date: Tue Jun 19 2012 - 04:06:50 CDT

> ParaTool can indeed do this. Load the PDB file in as the base molecule,
> then from Edit --> Internal coordinates select the "Autogenerate internal
> coordinates" button at the middle-center of the window. The box above will
> fill with the IC table. Then write out the topology file from File -->
> Write topology file.

Thank you, this is working beautifully!