VMD-L Mailing List

From: Ban Arn (ban.arn_at_gmail.com)
Date: Mon Apr 23 2012 - 05:29:34 CDT

Dear Francesco

Its the difference between length of the transmembrane helix and lipid
bilayer.

I am interested in calculating how the transmembrane helix adjust and adapt
in the lipid bilayer along the simulation time.

Many Thanks
Balaji

On Mon, Apr 23, 2012 at 11:17 AM, francesco oteri <francesco.oteri_at_gmail.com
> wrote:

> Hi Balaji,
> what do you mean with "hydrophobic mismatch"?
>
> Francesco
>
> Il giorno 23 aprile 2012 11:08, Ban Arn <ban.arn_at_gmail.com> ha scritto:
>
> Dear VMD users
>>
>> I am working on membrane simulations and I would like to calculate
>> hydrophobic mismatch between proteins and lipids.
>>
>> Is there any vmd script available for the same.
>>
>> Kindly advice.
>>
>> Many Thanks
>> Balaji
>>
>>
>>
>
>
> --
> Cordiali saluti, Dr.Oteri Francesco
>