VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Mar 29 2012 - 10:44:28 CDT

Francesco,
  I'm afraid that much more information is needed in order to
help with this. There is no error message in the current version
of the autopsf plugin that matches what you're describing below.
Did you mean to say "psfgen" instead? What commands did you run?

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Sat, Mar 24, 2012 at 05:46:15PM +0100, Francesco Pietra wrote:
> Hi:
> "autopsf: can't read "logfilename"" has been posted often, even by
> myself in the past, and always resulted from mistakes (any kind of) in
> running autopsf. This time, with two instances of the same metal
> complex, differing in coordination, in the protein, after many
> attempts I am unable to catch the mistake. There are only four patches
> per complex to apply.
>
> Is any flag to add to get the output verbose? That question applies to
> psfgen, too, which I am considering to use, in the hope to get a clue.
>
> thanks
>
> francesco pietra 

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