From: oguz gurbulak (
Date: Mon Jan 02 2012 - 13:07:45 CST

  I have three different segments in psf and pdb files. One of them is water and I want to create a picture of my system in VMD. To have a more clear picture I should use different representations for my different segments. For instance, segment A and C will be lines , segment B ( water ) will be VDW or ball like drawing method like ions. Is it possible to generate a picture that is similar to that in VMD ? Thanks for your help. ________________________________ From: Axel Kohlmeyer <> To: oguz gurbulak <> Cc: "" <> Sent: Monday, January 2, 2012 7:42 PM Subject: Re: vmd-l: represent water molecules On Mon, 2012-01-02 at 03:48 -0800, oguz gurbulak wrote: > Dear VMD users, > > > How can I represent water molecules ( or any segment in pdb file ) > with red balls ( ball representation ) in VMD ? there is no representation in VMD called "ball". you have to be a bit more specific what you are looking for. please always keep in mind that the quality of answers to a question depends very much on the quality of the question. axel. > > > > Thanks for your help. > > > > > > -- Dr. Axel Kohlmeyer College of Science and Technology, Institute for Computational Molecular Science, Temple University, Philadelphia PA, USA.