From: Axel Kohlmeyer (
Date: Thu Nov 24 2011 - 14:48:44 CST

On Thu, Nov 24, 2011 at 2:09 PM, mail gromacs <> wrote:
> Hello:
>   I've got Desmond MD simulation trajectory and I would like to convert them
> into single .pdb file. Is it possible to convert it by VMD text mode or

that is a very bad idea. you will throw away a _lot_ of valuable information,
since .pdb files record coordinates with massively reduced accuracy.

> command?

yes, you can script it, or use catdcd. it still doesn't
make it a good idea that you can do it.


> Thank you very much
> Best wishes

Dr. Axel Kohlmeyer
College of Science and Technology
Temple University, Philadelphia PA, USA.