VMD-L Mailing List

From: Balazs Jojart (jojartb_at_gmail.com)
Date: Fri Aug 12 2011 - 18:57:22 CDT

Hi Kapil,
Check this page:
http://opm.phar.umich.edu/
HTH,
Balazs

On 08/12/2011 06:19 PM, Kapil Amarnath wrote:
> Hi all,
>
> I am working with a membrane protein that is asymmetric and
> arbitrarily located and rotated in space. I would like to orient the
> protein "flat" onto the x-y plane of the coordinate system used in the
> pdb file, with the center of the protein at (0,0,0), and I would to
> obtain the coordinates of the protein in its new location/orientation.
> Is there any way to use VMD to obtain the necessary translation
> vector and rotation matrices for doing so? Is this information even
> contained in the pdb file?
>
> Thanks,
> Kapil
> 

-- 
Balazs Jojart, Ph.D.
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