From: Irene Newhouse (
Date: Tue May 24 2011 - 14:36:12 CDT

I have Desmond trajectories I'm analyzing with VMD. The protein is a dimer, and each dimer has 2 ligands bound to it. I know how to use pbctools to unwrap the trajectory so that the dimer units are moved back into the central cell, but the ligands don't move with them. How do I do that?

Irene Newhouse