VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Fri Mar 18 2011 - 15:23:12 CDT

You can do it in VMD as well:
set sel [atomselect top "protein and name CA"]
$sel get {x y}
(untested)

Regards,
Ajasja

On Fri, Mar 18, 2011 at 19:39, Joseph Bylund <joseph.bylund_at_gmail.com>wrote:

> How about:
> grep -E "^ATOM.{9}CA" myfile.pdb|awk '{print $7","$8}'
> you'd have to change the awk indices if it's chain " ".
> -Joe
>
>
> On 03/18/2011 01:58 PM, ban arn wrote:
>
>> Dear VMD users
>>
>> I would like to know is there any script available in vmd or from
>> others sources for projection of c-aplha atom coordinates on xy plane.
>>
>> Any help is greatly appreciated.
>>
>> Many Thanks
>> Balaji
>>
>
>