VMD-L Mailing List

From: Sladjana Maric (slladja_at_gmail.com)
Date: Thu Jun 03 2010 - 11:50:33 CDT

Hi,

I did but that looks like it is just different visualization method or I may be wrong... What I need are actual values on for potential on residues. Anyway I was able to solve problem using APBS software by writing potential in flat instead dx format. Thank you.

Have a nice day,
 
Sladjana Maric
Department of Physics
University of Houston
3201 Cullen Blvd
202 HSC, Rm 323D
Houston, TX, 77204-5002
smaric_at_mail.uh.edu
slladja_at_gmail.com
Phone: 713-743-8420

On Jun 3, 2010, at 11:37 AM, John Stone wrote:

>
> Have you tried using the color by "volume" feature yet?:
> http://www.ks.uiuc.edu/Research/vmd/minitutorials/colorbypot/
>
> On Thu, May 27, 2010 at 06:16:15PM -0500, Sladjana Maric wrote:
>> Hi,
>> I recently started using APBS plugin in VMD and it looks like everything
>> is working just fine to the point where I visualize electrostatic
>> potential map. Can someone please help me to understand if there is a way
>> so one can use this result and evaluate electrostatic potential on
>> particular residue.
>> Thank you.
>> Sladjana Maric
>> Department of Physics
>> University of Houston
>> 3201 Cullen Blvd
>> 202 HSC, Rm 323D
>> Houston, TX, 77204-5002
>> smaric_at_mail.uh.edu
>> slladja_at_gmail.com
>> Phone: 713-743-8420
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
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> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078