VMD-L Mailing List

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Wed Sep 09 2009 - 13:20:21 CDT

Dear vmd users,

First, I was confused by the user guide.
The angle in the argument is "180 - angle formed by donor, hydrogen, and
acceptor".

Second, The return indices in the guide are correct. The second list
contains acceptors.
This is my mistake.

Sorry for the confusion.

On Wed, Sep 9, 2009 at 11:18 AM, Myunggi Yi <myunggi_at_gmail.com> wrote:

> Dear vmd users,
>
> I found two mistakes in the user guide in "Measure hbonds".
> The angle is "180 - angle formed by the donor, hydrogen, and acceptor"
> The second list contains indices of hydrogen atoms and the third one
> contains acceptors's indices.
>
> http://www.ks.uiuc.edu/Research/vmd/current/ug/node133.html
>
>
>
> --
> Best wishes,
>
> Myunggi Yi
> ==================================
> 91 Chieftan Way
> Institute of Molecular Biophysics
> Florida State University
> Tallahassee, FL 32306
>
> Office: +1-850-645-1334
>
> http://sites.google.com/site/myunggi/
> http://people.sc.fsu.edu/~myunggi/ <http://people.sc.fsu.edu/%7Emyunggi/>
>
> 

-- 
Best wishes,
Myunggi Yi
==================================
91 Chieftan Way
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306
Office: +1-850-645-1334
http://sites.google.com/site/myunggi/
http://people.sc.fsu.edu/~myunggi/